Data · dataset · 2020

Kleborate v2.0.0

Listed in LSHTM Data Compass

Description

Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type; species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.); ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA); virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2); antimicrobial resistance determinants: acquired genes, SNPs, gene truncations and intrinsic β-lactamases; K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive.

This release (v2.0.0) is the one used for the manuscript describing Kleborate: Lam et al, 2021, Nature Communications. For documentation and developments see github.com/katholt/Kleborate

Topics

From keywords: Earth & Environmental Science · Humanities · Life Sciences · Medicine & Health · Social Science

Provenance · 1 source records, 8 field assertions

Source	Key	Last seen	Raw
LSHTM Data Compass	oai:datacompass.lshtm.ac.uk:2429	12 d ago	JSON v1

Field	Assertion	Extractor	Evidence
concepts[field].local:field:earth-environmental	mapping · lshtm ac uk	connector:lshtm_ac_uk@1.0.0
concepts[field].local:field:humanities	mapping · lshtm ac uk	connector:lshtm_ac_uk@1.0.0
concepts[field].local:field:life-sciences	mapping · lshtm ac uk	connector:lshtm_ac_uk@1.0.0
concepts[field].local:field:medicine-health	mapping · lshtm ac uk	connector:lshtm_ac_uk@1.0.0
concepts[field].local:field:social-science	mapping · lshtm ac uk	connector:lshtm_ac_uk@1.0.0
description	source · lshtm ac uk	connector:lshtm_ac_uk@1.0.0	/metadata/dc/description
publication_date	source · lshtm ac uk	connector:lshtm_ac_uk@1.0.0
title	source · lshtm ac uk	connector:lshtm_ac_uk@1.0.0	/metadata/dc/title

Kleborate v2.0.0

Description

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Where it is published

Topics