Table · dataset · 2026
<p>GPS coordinates of sampling stations.</p>
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<div><p>Small Island Developing States (SIDS) face unique challenges for microplastics (MPs) monitoring due to limited infrastructure and resources.
Description
In this context, we propose and test innovative approaches toward a standardized, low-cost methodology for quantifying MPs in SIDS. We evaluate the giant clam <i>T. maxima</i> as a bio-integrator, combining Nile red (NR) fluorescence staining with automated machine-learning detection.
We optimized a digestion protocol using KOH and HNO<sub>3</sub> for <i>T. maxima</i> viscera, and developed a DAPI-guided multi-spectra composite imaging approach based on triband fluorescence (DAPI, FITC, TRITC), to enhance polymer detection while reducing blooming artifacts. A semi-automated annotation pipeline using Labkit interactive segmentation with CLIP/UMAP clustering efficiently generated training data from 6711 fluorescence images.
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A U-Net model was trained on composite images to segment fluorescent particles. The workflow was applied to giant clams from three French Polynesian islands (Makemo, Hao, Tubuai), and NR-based estimates were validated against µFTIR spectroscopy. The model achieved F1-scores of 0.741 for giant clam samples and 0.657 for controls, comparable to human annotation (F1 = 0.680).
MPs were detected across all islands, with highest concentrations in gills (16.9–52.7 particles·g<sup>−1</sup> wet weight) compared to viscera (2.5–11.0 particles·g<sup>−1</sup> ww). µFTIR validation revealed that NR overestimates MP counts (µFTIR: 0.80 ± 0.16 particles·g<sup>−1</sup> ww at Tubuai), primarily due to false positives from proteins, cellulose, and stearates. In Tubuai, polyamide (28.9%), PVC (12.6%), and polystyrene (10.7%) were the dominant polymers, suggesting contributions from fishing gear, agriculture, and household waste.
While NR-based quantification overestimates absolute MP counts, the automated pipeline demonstrates potential for high-throughput image processing, reproducible sample analysis, and methodological standardization. This workflow represents a first step toward scalable, low-cost approaches for MPs monitoring in insular systems, highlighting areas for further calibration and optimization. Future work should refine fluorescence thresholds and expand validation across species and locations.</p></div>
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Where it is published
- DOI doi.org/10.1371/journal.pone.0357014.t001 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
Provenance · 1 source records, 21 field assertions
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|---|---|---|---|
| figshare | oai:figshare.com:article/33867712 | 9 d ago | JSON v1 |
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