Omics · study · 2026
Genome-wide analysis of chromatin accessibility in WT and Setd2-KO macrophages-induced by LPS via ATAC-seq
Listed in NCBI GEO
Purpose: The goal of this study is to identify differential accessible DNA peaks in the resolution phase of inflammation induced by LPS
Description
Methods
We profiled ATAC-seq in bone marrow-derived macrophages from WT and Setd2-cKO mice stimulated with LPS for 0h, 4h, 16h. Results: We find different accessible DNA peaks under LPS stimulation at different time.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157619 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157619 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA662240 ncbi.nlm.nih.gov/bioproject/PRJNA662240 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE157619 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |