Data · dataset · 2026
The data of CottonGD database for article "Newly-developed T2T pangenome database empowers genetic variation exploration and gene functional discovery in cotton"
Listed in ScienceDB
We developed CottonGD , the first comprehensive database built upon 28 T2T‑level cotton genomes.
Description
Based on a graph‑based pangenome, CottonGD captures the complete variations diversity of the genomes and catalogs 761,536 high‑confidence structural variations (SVs) compared previous reports. It also integrates phenotypic data for 1,671 upland cotton accessions, 420 transcriptomic profiles across 15 tissues and extensive functional annotations for genomes.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.j00210.00069 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Genomics and transcriptomics 76%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00210.00069 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:field:310204 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (76%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |