Omics · study · 2026
ChIP-seq profiling of MNDA in iPSC-derived human Sertoli-like cells
Listed in NCBI GEO
Sertoli cells play vital roles in sustaining normal spermatogenesis.
Description
To explore the genomic binding and regulatory capacity of MNDA in Sertoli cells, we used human induced pluripotent stem cell-derived Sertoli-like cells (hiSCs) as an in vitro human Sertoli cell model, whose preparation procedures were adapted from the previously reported study (Liang et al., eLife, 2019). MNDA expression was induced in hiSCs via IFNα stimulation, and ChIP-seq was conducted to capture genome-wide MNDA binding events.
Bioinformatic analysis identified thousands of specific MNDA binding peaks throughout the genome. These peaks were distributed across diverse genomic regions, including intergenic regions, gene bodies and regulatory regions flanking transcription start sites. Collectively, these results indicated that MNDA binds to multiple types of genomic loci and may modulate the transcription of downstream target genes.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335393 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335393 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1478469 ncbi.nlm.nih.gov/bioproject/PRJNA1478469 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 68%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335393 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |