Data · dataset · 2020
Replication Data for: Wide lag time distributions break a trade-off between reproduction and survival in bacteria
Listed in IISH Dataverse
Code and text file with parameter values to replicate simulations presented in Figure 6 of the paper.
Description
The code produces two files per replicate with the values of the traits u and v in the population over evolutionary time. The parameters can be adjusted in the text file and are: K = carrying capacity; n0= initial size of the population at the start of a growth cycle; doubrate= doubling rate; u0= initial value of u for all individuals in the population; v0= initial value of v for all individuals in the population; u= mutation rate; mutsize= size of a mutational step; numrep= number of evolutionary replicates to run; numcycles = number of growth cycles per replicate (the default is to run each simulation until >95% of the individuals have u=0 but the simulations can also be run for a fixed number of growth cycles per replicate which is set by this parameter.
To use this option go to lines 71-72 of the code and change accordingly).
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2F3ISHX8 ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/3ishx8 ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2F3ISH… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Simulation 75% · Text 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/3ISHX8 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[method].local:method:simulation | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:text | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
| updated_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| version_label | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 |