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Data · dataset · 2020

Replication Data for: Wide lag time distributions break a trade-off between reproduction and survival in bacteria

Listed in IISH Dataverse

Code and text file with parameter values to replicate simulations presented in Figure 6 of the paper.

Description

The code produces two files per replicate with the values of the traits u and v in the population over evolutionary time. The parameters can be adjusted in the text file and are: K = carrying capacity; n0= initial size of the population at the start of a growth cycle; doubrate= doubling rate; u0= initial value of u for all individuals in the population; v0= initial value of v for all individuals in the population; u= mutation rate; mutsize= size of a mutational step; numrep= number of evolutionary replicates to run; numcycles = number of growth cycles per replicate (the default is to run each simulation until >95% of the individuals have u=0 but the simulations can also be run for a fixed number of growth cycles per replicate which is set by this parameter.

To use this option go to lines 71-72 of the code and change accordingly).

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Simulation 75% · Text 75%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
IISH Dataversedoi:10.34894/3ISHX812 d agoJSON v1
FieldAssertionExtractorEvidence
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concepts[field].local:field:medicine-healthmapping · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0/subjects
concepts[method].local:method:simulationenrichment · datasets iisg amsterdamkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:textenrichment · datasets iisg amsterdamkeyword-concept-rules@1.0.0title+description (75%)
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