Data · dataset · 2024
One scaffold, two conformations: The ring-flip of the messenger InsP8 occurs under cytosolic conditions
Listed in Redata
Inositol poly- and pyrophosphates (InsPs and PP-InsPs) are central eukaryotic messengers.
Description
These very highly phosphorylated molecules can exist in two distinct conformations, a canonical one with five phosphoryl groups in equatorial positions, and a “flipped” axial conformation. Using 13C-labeled InsPs / PP-InsPs, the behavior of these molecules was investigated by 2D-NMR under solution conditions reminiscent of a cytosolic environment.
Remarkably, the most highly phosphorylated messenger InsP8 readily adopts both conformations at physiological conditions. Environmental factors - such as pH, metal cation composition, and temperature - strongly influence the conformational equilibrium. Thermodynamic data revealed that the transition of InsP8 from the equatorial to the axial conformation is, in fact, an exothermic process.
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The speciation of InsPs and PP-InsPs also affects their interaction with protein binding partners; addition of Mg2+ decreased the binding constant Kd of InsP8 to an SPX protein domain. The results illustrate that PP-InsP speciation reacts very sensitively to solution conditions, suggesting it might act as an environment-dependent molecular switch.
Links
Where it is published
- Dataverse dataset page redata.anii.org.uy/dataset.xhtml?persistentId=doi%3A10.5281%2Fzenodo.7665634 ↗
landing page · from redata anii org uy
- DOI doi.org/10.5281/zenodo.7665634 ↗
DOI / persistent id · from redata anii org uy
Catalogue records · 1
- Dataverse API redata.anii.org.uy/api/datasets/:persistentId/?persistentId=doi%3A10.5281%2Fzenod… ↗
metadata API · from redata anii org uy
Topics
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 68%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Redata | doi:10.5281/zenodo.7665634 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3101 | enrichment · redata anii org uy | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].local:field:life-sciences | mapping · redata anii org uy | connector:redata_anii_org_uy@1.0.0 | /subjects |
| created_date | source · redata anii org uy | connector:redata_anii_org_uy@1.0.0 | |
| description | source · redata anii org uy | connector:redata_anii_org_uy@1.0.0 | /description |
| publication_date | source · redata anii org uy | connector:redata_anii_org_uy@1.0.0 | |
| title | source · redata anii org uy | connector:redata_anii_org_uy@1.0.0 | /name |
| updated_date | source · redata anii org uy | connector:redata_anii_org_uy@1.0.0 |