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Data · dataset · 2026

<p>Newly identified glia-specific genes.</p>

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<p><b>(A)</b> Pearson correlation coefficient of larval clusters from Konstantinides <i>and colleagues</i>, 2022 with elav-positive bulk transcriptome (x-axis) and repo-positive transcriptome (y-axis) from Özel <i>and colleagues</i>, 2021. <b>(A’)</b> UMAP representation of all cells in the larval dataset from Konstantinides <i>and colleagues</i>, 2022. Glial cells are in red and nonglial cells in dark gray. <b>(B)</b> Table showing the top differentially expressed genes between Glial and NonGlial cells. <b>(C)</b> Dot plot representing the expression of all genes from (B) by glial clusters in the larva dataset. <b>(D)</b> Combined HCR-RNA FISH and antibody staining for detection of both <i>repo</i> mRNA (cyan and separate channel below) and Repo protein (magenta and separate channel below).

Note that surface glia presents a strong protein staining but weak mRNA signal. <b>(E)</b> Double staining of AnxB9 (cyan and separate channel to the right) and Repo (magenta) antibodies. <b>(F)</b> Double staining of CG32032 (cyan and separate channel to the right) and Repo (magenta) antibodies. <b>(G)</b> Dot plot showing all nonannotated clusters from Kurmangaliyev <i>and colleagues</i>, 2020—a late pupa (P96) Optic Lobe dataset.

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Arrows point to clusters with glial cells that were not previously identified as glia due to lack of <i>repo</i> expression. <b>(H)</b> Dot plot showing the three newly identified glial genes by cluster of a ventral nerve cord (VNC) dataset (Allen <i>and colleagues</i>, 2020). Arrows point to clusters that were not identified as glia by regular pan-glial markers that were later annotated as glia by specific cell type markers by the authors.

Open arrowheads show clusters that express high levels of <i>AnxB9</i> that are most likely not glia, see <b>(I)</b>. (I) Cross section of a larval VNC stained for AnxB9 (cyan and separate channel to the right) and Repo (magenta). Note that some AnxB9<sup>+</sup> in the cortex do not present Repo antibody (yellow arrowheads) and may be neurons. pg = perineurial glia, spg = subperineurial glia, eg = epithelial glia, mg = marginal glia, mng = medulla neuropil glia, xgi = inner chiasm glia and np = neuropil.

The code used to generate the graphs can be found at <a href="zenodo.org/records/21890456" target="_blank">zenodo.org/records/21890456</a>.</p> <p>(TIFF)</p>

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