Data · collection

The Genome Browser

Listed in NASA Earthdata CMR

This site contains the reference sequence and working draft assemblies for a large collection of genomes (i.e. vertebrate, deuterostome, insect, nematode, etc).

Description

It also provides a portal to the ENCODE project. We encourage you to explore these sequences with our tools.

The Genome Browser zooms and scrolls over chromosomes, showing the work of annotators worldwide. The Gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways. Blat quickly maps your sequence to the genome.

Read the rest (1 more)

The Table Browser provides convenient access to the underlying database. VisiGene lets you browse through a large collection of in situ mouse and frog images to examine expression patterns. (Source: UCSC Genome Bioinformatics)

Topics

Stated by source: Animal Breeding And Genetics · Not provided · Plant Breeding And Genetics
Inferred from text: Image 65% · Tabular 65%

Provenance · 1 source records, 11 field assertions

Source	Key	Last seen	Raw
NASA Earthdata CMR	C1214586382-SCIOPS	12 d ago	JSON v1

Field	Assertion	Extractor	Evidence
access_level	source · NASA CMR	connector:nasa_cmr@1.0.0
concepts[measured_variable].gcmd:earth-science/agriculture/agricultural-plant-science/plant-breeding-and-genetics	source · NASA CMR	connector:nasa_cmr@1.0.0
concepts[measured_variable].gcmd:earth-science/agriculture/animal-science/animal-breeding-and-genetics	source · NASA CMR	connector:nasa_cmr@1.0.0
concepts[modality].local:modality:image	enrichment · NASA CMR	keyword-concept-rules@1.0.0	title+description (65%)
concepts[modality].local:modality:tabular	enrichment · NASA CMR	keyword-concept-rules@1.0.0	title+description (65%)
concepts[platform].gcmd_platform:not-provided	source · NASA CMR	connector:nasa_cmr@1.0.0
description	source · NASA CMR	connector:nasa_cmr@1.0.0	/umm/Abstract
license_text	source · NASA CMR	connector:nasa_cmr@1.0.0
temporal	source · NASA CMR	connector:nasa_cmr@1.0.0	/umm/TemporalExtents
title	source · NASA CMR	connector:nasa_cmr@1.0.0	/umm/EntryTitle
version_label	source · NASA CMR	connector:nasa_cmr@1.0.0

Open at cmr.earthdata.nasa.gov ↗

Access: open
License: The sequence and annotation data displayed in the Genome Browser are freely available for academic, nonprofit, and personal use with the following conditions: * Genome sequence data use restrictions are noted within the species sections on the Credits page. * Some annotation tracks contributed by external collaborators contain proprietary data that have specific use restrictions. To check for restrictions associated with a particular genome assembly, review the database/README.txt file in the assembly's downloads directory. The Genome Browser and Blat software are free for academic, nonprofit, and personal use. A license is required for commercial use. See the Licenses page for more information. Program-driven use of this software is limited to a maximum of one hit every 15 seconds and no more than 5,000 hits per day. For assistance with questions or problems regarding the UCSC Genome Browser software, database, genome assemblies, or release cycles, see the FAQ. (Source: UCSC)
Version: Not provided
Coverage: 1970-01-01 → ?
Platforms: Not provided
Processing level: Not provided
Languages: en

CMR concept: C1214586382-SCIOPS
CMR short name: UCSC_gb.vNot provided

The Genome Browser

Description

Links

Get the data

Topics