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Omics · study · 2026

Pheno-transcriptomic characterization of hooked hairs in common bean

Listed in NCBI GEO

The environmental changes caused by climate change enhance the effects of land degradation.

Description

This faces a big challenge for agriculture to secure food production in the world. Because of the key role of plant roots in the soil and environment interactions, understanding the cell structures, genetic circuits, and mechanisms controlling the root architecture may help to mitigate these effects.

However, the information about the role of the cell structures composing the root architecture, especially during early developmental stages, is very limited. Here we reported a high-dimensional imaging method to support the existence of a novel root hair-like structure in common bean (Phaseolus vulgaris), named ‘hooked hairs’, by combining with comparative RNA-sequencing analyses to other common bean hair-like structures confirming a distinct transcriptomic landscape with particular pathways enriched.

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We found a phenotypic response to phosphate and nitrate starvation, suggesting the role of these hooked hairs in nutrient uptake. Our results provided strong evidence for the importance of high-imaging phenotyping methods and transcriptomics to characterize complex root structures, confirming the plasticity of root epidermal cells to adapt to different environments during different developmental stages.

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From keywords
Life Sciences
Inferred from text
Crop and pasture production 72% · Imaging 75%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE26105112 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3004enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (72%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:imagingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title