Omics · study · 2026
Pheno-transcriptomic characterization of hooked hairs in common bean
Listed in NCBI GEO
The environmental changes caused by climate change enhance the effects of land degradation.
Description
This faces a big challenge for agriculture to secure food production in the world. Because of the key role of plant roots in the soil and environment interactions, understanding the cell structures, genetic circuits, and mechanisms controlling the root architecture may help to mitigate these effects.
However, the information about the role of the cell structures composing the root architecture, especially during early developmental stages, is very limited. Here we reported a high-dimensional imaging method to support the existence of a novel root hair-like structure in common bean (Phaseolus vulgaris), named ‘hooked hairs’, by combining with comparative RNA-sequencing analyses to other common bean hair-like structures confirming a distinct transcriptomic landscape with particular pathways enriched.
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We found a phenotypic response to phosphate and nitrate starvation, suggesting the role of these hooked hairs in nutrient uptake. Our results provided strong evidence for the importance of high-imaging phenotyping methods and transcriptomics to characterize complex root structures, confirming the plasticity of root epidermal cells to adapt to different environments during different developmental stages.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE261nnn/GSE261051 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE261051 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1084882 ncbi.nlm.nih.gov/bioproject/PRJNA1084882 ↗
project · from NCBI GEO
- PubMed 42090491 pubmed.ncbi.nlm.nih.gov/42090491 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Crop and pasture production 72% · Imaging 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE261051 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3004 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:imaging | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |