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Omics · study · 2026

The evolution of the p53 transcriptional response across primates [ATAC-seq]

Listed in NCBI GEO

p53 is a transcription factor that acts as a central signaling node in cells.

Description

It is activated by DNA damage, senescence, amino acid starvation, among other stressors; and in turn controls diverse cellular responses including apoptosis, cell cycle arrest, metabolic changes, etc. It is not clear the extent with which the transcriptional response by such an important regulator has evolved across animals.

We generated nascent transcription (PRO-seq), chromatin accessibility (ATAC-seq), and steady-state mRNA expression (RNA-seq) datasets from 10 primates, 1 ungulate, and 1 bird; to investigate the initial transcriptional response upon p53 activation with Nutlin-3a.

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From keywords
Life Sciences
Inferred from text
Biochemistry and cell biology 70% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE21703212 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3101enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title