Omics · study · 2026
The evolution of the p53 transcriptional response across primates [ATAC-seq]
Listed in NCBI GEO
p53 is a transcription factor that acts as a central signaling node in cells.
Description
It is activated by DNA damage, senescence, amino acid starvation, among other stressors; and in turn controls diverse cellular responses including apoptosis, cell cycle arrest, metabolic changes, etc. It is not clear the extent with which the transcriptional response by such an important regulator has evolved across animals.
We generated nascent transcription (PRO-seq), chromatin accessibility (ATAC-seq), and steady-state mRNA expression (RNA-seq) datasets from 10 primates, 1 ungulate, and 1 bird; to investigate the initial transcriptional response upon p53 activation with Nutlin-3a.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE217nnn/GSE217032 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217032 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA896598 ncbi.nlm.nih.gov/bioproject/PRJNA896598 ↗
project · from NCBI GEO
- PubMed 38037122 pubmed.ncbi.nlm.nih.gov/38037122 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 70% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE217032 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |