Data · collection · 2024
The complete mitochondrial genome of a new invader fish in France, the pink salmon Oncorhynchus gorbuscha (Walbaum, 1792) (Teleostei, Salmonidae)
Listed in GBIF
Description
This dataset contains the digitized treatments in Plazi based on the original journal article Denys, Gaël P. J., Josset, Quentin, Ferreira, Amélie Verde, Dettaï, Agnès (2024): The complete mitochondrial genome of a new invader fish in France, the pink salmon Oncorhynchus gorbuscha (Walbaum, 1792) (Teleostei, Salmonidae). Cybium 48 (2): 111-120, DOI: 10.26028/cybium/2024-005, URL: dx.doi.org/10.26028/cybium/2024-005 Abstract. – The pink salmon Oncorhynchus gorbuscha (Teleostei, Salmonidae) is a North Pacific species.
It arrived in Northern Europe through freshwater migration each odd year since 2017, creating management issues. In this study, we sequenced a complete mitochondrial genome for a pink salmon caught in the Bresle River (France) with a museum voucher. The sequence is 16,695 bp in length and is similar to previous mitogenomes published within this genus.
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Length heteroplasmy on the control region for this species was detected, as described in previous molecular studies. We tested several primers commonly used for metabarcoding studies on four markers (12S, 16S, COI and Cytb), and all allow the discrimination of this species. This mitogenome is a reference for molecular identification, for instance in like environmental DNA studies.
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Where it is published
- GBIF dataset page gbif.org/dataset/53082d77-53e9-41c6-9487-9a1e28de7ffa ↗
landing page · from gbif
- DOI doi.org/10.15468/82thzg ↗
DOI / persistent id · from gbif
Documentation and papers
- Publisher page tb.plazi.org/GgServer/summary/AF7C446A7931FFB1FFF5FF8AFFFFCE2C ↗
documentation · from gbif
Catalogue records · 1
- GBIF API api.gbif.org/v1/dataset/53082d77-53e9-41c6-9487-9a1e28de7ffa ↗
metadata API · from gbif
Topics
- From keywords
- Life Sciences
- Inferred from text
- Evolutionary biology 71%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| GBIF | 53082d77-53e9-41c6-9487-9a1e28de7ffa | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · gbif | connector:gbif@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · gbif | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · gbif | connector:gbif@1.0.0 | |
| created_date | source · gbif | connector:gbif@1.0.0 | |
| description | source · gbif | connector:gbif@1.0.0 | /description |
| license | source · gbif | connector:gbif@1.0.0 | |
| publication_date | source · gbif | connector:gbif@1.0.0 | |
| title | source · gbif | connector:gbif@1.0.0 | /title |
| updated_date | source · gbif | connector:gbif@1.0.0 |