Omics · study · 2026
Rapamycin-induced fatty liver in mice is attenuated by chloroquine co-treatment in an ERR⍺-dependent manner
Listed in NCBI GEO
Metabolic dysfunction-associated steatotic liver disease (MASLD), previously known as non-alcoholic fatty liver disease (NAFLD), remains a major health concern world-wide.
Description
Hepatic steatosis manifests by the aberrant accumulation of lipids in hepatocytes. We have previously shown that pharmacological inhibition of autophagy repressor mTOR complex 1 (mTORC1) by rapamycin, a widely utilized potent immunosuppressant, induces MASLD under normal conditions.
Notably, this phenotype was found exacerbated in mice with genetic or pharmacological inhibition of the master transcriptional regulator of energy metabolism, nuclear receptor ERR⍺. In this study, we show that combining autophagy inhibitor chloroquine with the autophagy inducer rapamycin attenuates the severity of hepatic lipid deposition observed with rapamycin monotherapy. Bulk mRNA-seq profiling showed that chloroquine co-injection reverses the upregulation of a large proportion of genes linked to lipid metabolism homeostasis found induced by rapamycin alone.
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Interrogation of these genes for direct transcriptional regulators identified ERR⍺ among top candidates. Using a mouse model with genetic ERR⍺ ablation, we demonstrate a crucial dependency on ERR⍺ activity for the observed amelioration of rapamycin-induced hepatic steatosis by chloroquine addition. Rather than reversing the transcriptional upregulation of lipid metabolism-associated genes, many genes were found further upregulated by chloroquine co-treatment in livers of ERR⍺-null mice, with evidence linking the impaired management of hepatic lipid overload to underling mitochondrial dysfunction.
Together, these findings underscore a critical role of ERR⍺ in reversing MASLD.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE330nnn/GSE330751 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330751 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1465368 ncbi.nlm.nih.gov/bioproject/PRJNA1465368 ↗
project · from NCBI GEO
- PubMed 42544714 pubmed.ncbi.nlm.nih.gov/42544714 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE330751 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |