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Omics · study · 2026

Rapamycin-induced fatty liver in mice is attenuated by chloroquine co-treatment in an ERR⍺-dependent manner

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Metabolic dysfunction-associated steatotic liver disease (MASLD), previously known as non-alcoholic fatty liver disease (NAFLD), remains a major health concern world-wide.

Description

Hepatic steatosis manifests by the aberrant accumulation of lipids in hepatocytes. We have previously shown that pharmacological inhibition of autophagy repressor mTOR complex 1 (mTORC1) by rapamycin, a widely utilized potent immunosuppressant, induces MASLD under normal conditions.

Notably, this phenotype was found exacerbated in mice with genetic or pharmacological inhibition of the master transcriptional regulator of energy metabolism, nuclear receptor ERR⍺. In this study, we show that combining autophagy inhibitor chloroquine with the autophagy inducer rapamycin attenuates the severity of hepatic lipid deposition observed with rapamycin monotherapy. Bulk mRNA-seq profiling showed that chloroquine co-injection reverses the upregulation of a large proportion of genes linked to lipid metabolism homeostasis found induced by rapamycin alone.

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Interrogation of these genes for direct transcriptional regulators identified ERR⍺ among top candidates. Using a mouse model with genetic ERR⍺ ablation, we demonstrate a crucial dependency on ERR⍺ activity for the observed amelioration of rapamycin-induced hepatic steatosis by chloroquine addition. Rather than reversing the transcriptional upregulation of lipid metabolism-associated genes, many genes were found further upregulated by chloroquine co-treatment in livers of ERR⍺-null mice, with evidence linking the impaired management of hepatic lipid overload to underling mitochondrial dysfunction.

Together, these findings underscore a critical role of ERR⍺ in reversing MASLD.

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concepts[disease].local:disease:diseaseenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title