Omics · study · 2026
Multi-omics study of small Intestine adaptation after total colectomy.
Listed in NCBI GEO
Transcriptomic Evidence of Colonic Metaplasia To compare whether total colon resection leads to gene changes in the ileal anastomosis site, we performed transcriptome analysis of the preoperative small intestine, preoperative colon, and 16-week postoperative anastomosis site of the small intestine [32].
Description
Through the analysis, we found significant differences in gene expression between the preoperative small intestine and colon (Figure 3A and B).
Furthermore, we observed changes in gene expression at the anastomosis site, where the gene expression profile shifted from typical small intestine genes to colon genes (Figure 3C and D), indicating further evidence of colonic metaplasia at the anastomosis site after TC surgery, which leads to gene expression alterations at the anastomosis site.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304257 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304257 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1299783 ncbi.nlm.nih.gov/bioproject/PRJNA1299783 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- Bioinformatics and computational biology 70%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304257 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |