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Gene expression changes in response to acute and chronic in vitro treatment with selpercatinib and pralsetinib in a murine Trim24-Ret cell line, TR.1

Listed in NCBI GEO

The TKIs selpercatinib and pralsetinib represent first line therapies for RET-positive lung cancer patients.

Description

Most patients exhibit responses, but treatment failure eventually occurs. To study acquired resistance in RET+ lung cancer, a novel murine lung cancer cell line was generated from C57BL/6 mice using an intratracheally injected Adeno-virus that contains Cas9 and guide RNAs targeting the Trim24 and Ret genes.

This induces a gene rearrangement producing the Trim24-Ret fusion gene and the development of lung tumors. A cell line, TR.1 was derived from a resulting lung tumor. In an effort to understand how TR.1 cells respond to selpercatinib and pralsetinib, we treated TR.1 cells in vitro for 1-5 days with either 100nM selpercatinib or DMSO-control.

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In addition, TR.1 cells were made resistant to selpercatinib and pralsetinib through established dose-escalation in vitro until cultures that were resistant to ~500 nM TKI were established. TR.1 cells cultured in 0.1% DMSO over the same timeframe were used as controls. At each time point or condition, RNA was isolated and submitted to bulk RNA-seq.

These data will allow a deeper understanding of mechanisms mediating acquired resistance in RET fusion-positive patients

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From keywords
Life Sciences
Inferred from text
Cancer 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE29899015 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:cancerenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title