Excel · study · 2026
Gene expression changes in response to acute and chronic in vitro treatment with selpercatinib and pralsetinib in a murine Trim24-Ret cell line, TR.1
Listed in NCBI GEO
The TKIs selpercatinib and pralsetinib represent first line therapies for RET-positive lung cancer patients.
Description
Most patients exhibit responses, but treatment failure eventually occurs. To study acquired resistance in RET+ lung cancer, a novel murine lung cancer cell line was generated from C57BL/6 mice using an intratracheally injected Adeno-virus that contains Cas9 and guide RNAs targeting the Trim24 and Ret genes.
This induces a gene rearrangement producing the Trim24-Ret fusion gene and the development of lung tumors. A cell line, TR.1 was derived from a resulting lung tumor. In an effort to understand how TR.1 cells respond to selpercatinib and pralsetinib, we treated TR.1 cells in vitro for 1-5 days with either 100nM selpercatinib or DMSO-control.
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In addition, TR.1 cells were made resistant to selpercatinib and pralsetinib through established dose-escalation in vitro until cultures that were resistant to ~500 nM TKI were established. TR.1 cells cultured in 0.1% DMSO over the same timeframe were used as controls. At each time point or condition, RNA was isolated and submitted to bulk RNA-seq.
These data will allow a deeper understanding of mechanisms mediating acquired resistance in RET fusion-positive patients
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE298nnn/GSE298990 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298990 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1272070 ncbi.nlm.nih.gov/bioproject/PRJNA1272070 ↗
project · from NCBI GEO
- PubMed 41921856 pubmed.ncbi.nlm.nih.gov/41921856 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE298990 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |