Omics · study · 2026
GmJAG1 regulates leaf shape development in soybean through transcriptional control of developmental and hormone signaling genes
Listed in NCBI GEO
RNA-seq time-course analysis of soybean (Glycine max) shoot apical meristem (SAM) development comparing broad-leaf (functional GmJAG1) and narrow-leaf (D9H mutation) genotypes.
Description
Four genotypes were examined: PI 532462A and LD11-2170 (broad-leaf, functional GmJAG1) and PI 612713B and LD11-7311 (narrow-leaf, D9H mutation in GmJAG1). Samples were collected at five developmental timepoints (TP0-TP4) representing progressive stages of SAM development from vegetative meristem to early leaf emergence.
Three biological replicates per genotype-timepoint combination yielded 60 total samples. This study identifies GmJAG1-regulated genes controlling leaf morphology in soybean.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE317nnn/GSE317596 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE317596 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1414516 ncbi.nlm.nih.gov/bioproject/PRJNA1414516 ↗
project · from NCBI GEO
- PubMed 42647956 pubmed.ncbi.nlm.nih.gov/42647956 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Genetically modified horticulture plants 75% · RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE317596 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:field:300106 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |