Omics · study · 2026
Addressing the multiple facets of ligand-receptor network inference
Listed in NCBI GEO
Part of a broader study about ligand-receptor interaction inference and a new framework expanding our SingleSignalR tool, we show how particular experimental designs, incuding bulk analyses, can be handled by this single-cell-orientate tool.
Description
Among these, the case of PDX is illustrated with a collection of PDAC PDX whose bulk RNA-sequencing data are made available here.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309679 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309679 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1336729 ncbi.nlm.nih.gov/bioproject/PRJNA1336729 ↗
project · from NCBI GEO
- PubMed 42444609 pubmed.ncbi.nlm.nih.gov/42444609 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Biological network analysis 76%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309679 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:field:310202 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (76%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |