Omics · dataset · 2014
Data from "Corset: enabling differential gene expression analysis for de novo assembled transcriptomes"
Listed in Zenodo
This dataset contains de novo transcriptome assemblies for three publicly available RNA-seq dataset (SRA055442, SRR453566-SRR453571 and GSE37704 ).
Description
For each assembly we also provide a table with the read counts per contig, the output from corset (clusters and counts), and the results from a genome-based analysis. This dataset was used to assess the performance of the corset software.
More detail is provided in the paper: Nadia M Davidson and Alicia Oshlack, Corset: enabling differential gene expression analysis for de novo assembled transcriptomes, Genome Biology 2014, 15 :410. genomebiology.com/2014/15/7/410/abstract
Links
Get the data
Where it is published
- Zenodo record zenodo.org/records/11134 ↗
landing page · from Zenodo
- DOI doi.org/10.5281/zenodo.11134 ↗
DOI / persistent id · from Zenodo
Documentation and papers
- doi.org /10.1186/preaccept-2088857056122054 ↗
IsSupplementTo 10.1186/preaccept-2088857056122054
publication · from Zenodo
Catalogue records · 1
- Zenodo API zenodo.org/api/records/11134 ↗
metadata API · from Zenodo
Topics
- From keywords
- RNA sequencing
- Inferred from text
- Genomics and transcriptomics 75% · Tabular 65%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Zenodo | 11134 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Zenodo | connector:zenodo@1.0.0 | /metadata/access_right |
| byte_size | source · Zenodo | connector:zenodo@1.0.0 | |
| concepts[field].anzsrc:field:310204 | enrichment · Zenodo | taxonomy-embedding@1.1.0 | title+keywords+description (75%) |
| concepts[modality].local:modality:rna-seq | mapping · Zenodo | vocabulary-mapper@1.0.0 | keywords['RNA-seq'] |
| concepts[modality].local:modality:tabular | enrichment · Zenodo | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · Zenodo | connector:zenodo@1.0.0 | |
| description | source · Zenodo | connector:zenodo@1.0.0 | /metadata/description |
| license_text | source · Zenodo | connector:zenodo@1.0.0 | |
| publication_date | source · Zenodo | connector:zenodo@1.0.0 | |
| title | source · Zenodo | connector:zenodo@1.0.0 | /metadata/title |
| updated_date | source · Zenodo | connector:zenodo@1.0.0 |