Data · dataset · 2014
Beads convolution/deconvolution simulation
Listed in DataCite
Simulation of beads acquired with a 100x / 1.4 NA objective, the pixel size is 65 nm and the Z spacing is 200 nm.
Description
This is a simple "pixelated" simulation. Beads were 3 to 4 voxels laterally and 1 voxel axially.
They were convolved with a PSF generated using the above parameters and assuming an embedding media of RI=1.4 and a depth below coverslip of 1 micron. Simulated phantom was convolved with PSF to produce a simluated "image", then deconvolved with 200 iterations of noncirculant Richardson Lucy. Low level code was written in Java (deconvolution, psf generation).
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High level code was written in Jython and can be found here - github.com/bnorthan/projects/tree/master/Scripts/Jython.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Beads_convolution_deconvolution_simulation/10… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1002167 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1002167 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1002167 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
- Inferred from text
- Image 75% · Simulation 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1002167 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[method].local:method:simulation | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:image | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |