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Omics · study · 2026

Bulk ATAC-seq of young HSCs and Selp high vs Selp low HSCs in pre-aged mice

Listed in NCBI GEO

Aging of hematopoietic stem cells (HSCs) is accompanied by changes in chromatin organization that precede and shape functional decline.

Description

P-selectin (Selp/CD62P) expression has been associated with inflammatory and stress-related hematopoietic states, yet how Selp expression relates to chromatin accessibility during the early stages of HSC aging remains largely unexplored. To address this, we performed bulk ATAC-seq on phenotypically defined HSCs isolated from young mice and from pre-aged mice, with the latter further subdivided according to surface Selp expression (Selp_high and Selp_low).

Genome-wide accessibility profiling was used to identify regulatory elements and transcription factor–associated regions that distinguish early aging and Selp-associated heterogeneity within the HSC compartment. These data provide a resource for investigating epigenetic remodeling and regulatory priming associated with early hematopoietic stem cell aging.

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Life Sciences
Provenance · 1 source records, 7 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE31930315 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title