Data · collection · 2022
Analysis of Voltage-gated Ion Channels in Antarctic Fish
Listed in NASA Earthdata CMR
We studied the molecular evolution and physiology of two types of ion channels: voltage gated potassium channels and transient receptor potential (TRP) channels.
Description
We also studied the molecular evolution and expression of water-passing channels, the aquaporins, to determine if these show signs of evolutionary change in notothenioids. We noted apparent amino acid substitutions at a number of sites in a muscle-expressing potassium channel (Kv1.3).
We were surprised to find that although the AAs at these sites appeared highly conserved in teleosts and even in tetrapods, reverting them singly, in pairs, or all together back to the ancestral condition had no effect on the biophysical properties of the channels that we measured (voltage-sensitivity; rate of activation) at room temperature as well as over a range of temperatures down to 4oC. The results for the TRP channels and aquaporins can be accessed in their publications.
Read the rest (1 more)
York and Zakon (2022) in Genome Biology and Evolution, and two forthcoming papers.
Links
Get the data
- doi.org /10.18738/t8/nxgnei ↗
Evolutionary analysis of transient receptor potential (TRP) channels in notothenioid fishes
download · from NASA CMR
- ncbi.nlm.nih.gov /bioproject/PRJNA758918 ↗
TagSeq tissue specific expression data for Antarctic Harpagifer antarcticus and tropical African cichlid Astatotilapia (Haplochromis) burtoni
download · from NASA CMR
- usap-dc.org /view/dataset/601695 ↗
Functional characterization of temperature activated ion channels from Antarctic fishes
download · from NASA CMR
Documentation and papers
- NSF Award Abstract nsf.gov/awardsearch/showAward.do?AwardNumber=1443637 ↗
documentation · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C2762346637-AMD_USAPDC.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C2762346637-AMD_USAPDC.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- FIELD INVESTIGATION · Fisheries
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C2762346637-AMD_USAPDC | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/oceans/aquatic-sciences/fisheries | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:field-investigation | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| created_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| updated_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |