Omics · study · 2026
Editing of SlMYB60 Reveals a Role in Cuticle Formation in Tomato
Listed in NCBI GEO
The transcriptional regulator, SlMYB60 (Solyc10g081490.1.1) stands out as the tomato ortholog of AtMYB60, a well-characterized guard cell-specific transcription factor in Arabidopsis involved in integrating multiple stress signals in stomata.
Description
To investigate the role of SlMYB60, CRISPR-Cas9 editing was applied to two commercial tomato cultivars (Ailsa Craig and Red Setter), generating knockout alleles through multiple sgRNAs.
T1 slmyb60-edited plants were assessed for stomatal aperture and drought response. Unexpectedly, mutant lines showed a slight but significative increase in stomatal pore opening in both leaves and cotyledons compared to wild type. Under dry-down conditions, leaf area, fresh weight, and relative water content were significantly affected by both genotype and treatment.
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RNA-seq analyses confirmed the strong downregulation of SlMYB60 in the edited lines and identified 186 differentially expressed genes (DEGs), many of which involved in cell wall or cuticle biosynthesis. Chlorophyll leaching assays indicated increased permeability in mutant lines, while electron microscopy revealed defects in epidermal cell surface structure and patterning. Notably, slmyb60 mutants exhibited thinner stomatal ledges compared to wild type, suggesting defects in stomatal architecture.
Although modulating stomatal activity remains a promising strategy to improve drought resilience in tomato, our findings reveal that SlMYB60, unlike its Arabidopsis homolog, is not confined to guard cells and plays broader roles in epidermal development, indicating divergences in the MYB60 regulatory network between Arabidopsis and tomato.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319218 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319218 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1422641 ncbi.nlm.nih.gov/bioproject/PRJNA1422641 ↗
project · from NCBI GEO
- PubMed 42108105 pubmed.ncbi.nlm.nih.gov/42108105 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Agricultural biotechnology 69% · Microscopy 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319218 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3001 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:microscopy | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |