Omics · study · 2026
Transcriptional response to enoxolone treatment in larval zebrafish
Listed in NCBI GEO
Excess apolipoprotein B-containing lipoproteins (B-lps) are a causative factor in cardiovascular disease.
Description
Using the LipoGlo reporter, in which NanoLuciferase is fused to the endogenous apoBb.1 locus, we performed a whole-animal phenotypic drug screen in larval zebrafish and identified enoxolone (18-beta-glycyrrhetinic acid), a triterpenoid derived from licorice root, as a B-lp-lowering compound. To define the transcriptional pathways underlying this effect, we treated 3 days post fertilization LipoGlo-expressing larvae with 8 uM enoxolone or vehicle and collected whole-animal RNA after 4, 8, 12, 16, or 24 hours of treatment.
Enoxolone induced a transcriptional response detectable by 4 hours that broadened with treatment duration. The early response was enriched for cholesterol and isoprenoid biosynthesis, lipid transport, and coenzyme A metabolism, whereas the late response was enriched for carbohydrate metabolism and signaling pathways. The cholesterol sensor insig1 was upregulated at every duration examined.
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Enoxolone-responsive genes overlapped substantially with genes differentially expressed in hnf4a knockout zebrafish intestines, but not with hnf4g knockouts, supporting HNF4 alpha as a target of enoxolone.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341507 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341507 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1502865 ncbi.nlm.nih.gov/bioproject/PRJNA1502865 ↗
project · from NCBI GEO
- PubMed 39605440 pubmed.ncbi.nlm.nih.gov/39605440 ↗
publication · from NCBI GEO
- PubMed 42657783 pubmed.ncbi.nlm.nih.gov/42657783 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Cardiovascular disease 75% · Disease 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341507 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cardiovascular-disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |