Table · dataset · 2026
Physicochemical properties of syringic acid-adsorbed XZn<sub>11</sub>O<sub>12</sub> (X = Zn, Ti, Ni, Zr) nanocages and binding interactions with aureusimine biosynthetic cluster reductase domain
Listed in ZivaHub and Deakin Research Online and DMU Figshare — shown once because both records carry DOI 10.6084/m9.figshare.34036934.v1
Description
<p>This study examined the physicochemical features of syringic acid (SA) adsorption on metal-incorporated zinc oxide nanocages (SA@XZn<sub>11</sub>O<sub>12</sub>, X = Zn, Ti, Ni and Zr) using density functional theory, and their binding interactions with the aureusimine biosynthetic cluster reductase domain (AusA) using molecular docking. The adsorption of SA on XZn<sub>11</sub>O<sub>12</sub> nanocages significantly modifies their quantum mechanical properties and enhances their binding affinity towards AusA, a target enzyme of <i>S. aureus</i>.
SA@ZrZn<sub>11</sub>O<sub>12</sub> exhibited the most favourable binding characteristics, with an adsorption energy of −38<i>.</i>39 kcal/mol, a dipole moment of 7.69 Debye and an energy gap of 0.52 eV using B3LYP/LANL2DZ calculations in the gas phase, which were further evaluated in the water phase and with the WB97XD functional. Global reactivity descriptors, UV–visible spectral analysis, non-covalent interactions and optical properties also supported the superior electronic characteristics of the Zr-doped complex.
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Molecular docking revealed that SA@ZrZn<sub>11</sub>O<sub>12</sub> binds favourably to the active site of AusA, with a docking score of −5<i>.</i>50 kcal/mol. The overall analysis indicates that SA@ZrZn<sub>11</sub>O<sub>12</sub> may serve as a promising candidate among the investigated complexes, providing valuable insights into the rational design of a novel antibacterial agent against <i>S. aureus</i>. Nevertheless, experimental studies are needed to validate these computational findings.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.34036934.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Astronomy & Astrophysics · Astronomy & Astrophysics · Astronomy & Astrophysics · Chemistry · Chemistry · Chemistry · Density functional theory · Density functional theory · Density functional theory · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Life Sciences · Life Sciences · Life Sciences · Medicine & Health · Medicine & Health · Medicine & Health
- Inferred from text
- Cheminformatics and quantitative structure-activity relationships 76%
Provenance · 3 source records, 24 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34036934 | 4 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/34036934 | 4 d ago | JSON v1 |
| DMU Figshare | oai:figshare.com:article/34036934 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
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| concepts[field].local:field:astronomy | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:astronomy | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:astronomy | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
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| concepts[field].local:field:chemistry | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[method].local:method:dft | mapping · figshare dmu ac uk | vocabulary-mapper@1.0.0 | keywords['density functional theory'] |
| concepts[method].local:method:dft | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['density functional theory'] |
| concepts[method].local:method:dft | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['density functional theory'] |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |