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Omics · study · 2026

Transcriptomic Signatures Confirm Conserved Molecular Responses to Glucocorticoid Receptor Agonists in Fathead Minnow (Pimephales promelas)

Listed in NCBI GEO

In this study, fathead minnow larvae were exposed to eight concentrations of two glucocorticoid receptor agonists, dexamethasone and fluticasone, and assessed transcriptome-wide gene expression changes using RNA-seq.

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Differential gene expression analysis revealed substantial overlap in affected genes between the two compounds, supporting their shared mechanism of action. Transcriptomic points of departure (tPODs) were calculated to identify concentrations at which early transcriptomic responses would likely occur.

Functional enrichment analysis identified activated biological pathways and enabled the calculation of biological pathway altering concentrations (BPACs). Both compounds significantly altered pathways related to glucocorticoid activity, with fluticasone showing higher potency in most of the pathways. The significant overlap in differentially expressed genes and enriched pathways provides evidence that transcriptomic profiling can effectively detect shared mechanisms of action between related compounds.

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These findings support the utility of RNA-seq data in read-across approaches for chemical risk assessment and highlight the conserved molecular responses to glucocorticoid receptor activation in fathead minnows.

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Life Sciences
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RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE29445915 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title