Omics · dataset · 2021
A study of MapToCleave: high-throughput profiling of microRNA biogenesis in living cells. Kang et al. : MapToCleave unprocessed miRNA precursors
Listed in Teesside University Research Data Repository
MapToCleave_unprocessed_miRNA_precursor_IDs.txt, Related to Figure 2B.
Description
The file contains the identity information of MapToCleave unprocessed miRNA precursors tested in human HEK-293T cells. The human (hsa), mouse (mmu), drosophila (dme) and nematode (cel) miRNA precursors are bona fide miRNA curated in MirGeneDB, while planarian (sme) and sea anemone (nve) miRNA precursors are curated in miRBase.
It should be noted that 16 unprocessed miRNA precursors annotated as mirtron were removed from the list. They will not affect the analysis. The removed mirtron miRNA precursors are: cel-mir-62:MI0000033:in:mirtron,dme-mir-1003:MI0005864:in:mirtron,dme-mir-1004:MI0005865:in:mirtron,dme-mir-1005:MI0005866:in:mirtron,dme-mir-1006:MI0005867:in:mirtron,dme-mir-1007:MI0005868:in:mirtron,dme-mir-1008:MI0005869:in:mirtron,dme-mir-1009:MI0005870:in:mirtron,dme-mir-1010:MI0005871:in:mirtron,dme-mir-1012:MI0005873:in:mirtron,dme-mir-1013:MI0005874:in:mirtron,dme-mir-1014:MI0005875:in:mirtron,hsa-mir-3940:MI0016597:in:3p-tailed,hsa-mir-5010:MI0017878:in:5p-tailed,mmu-mir-1981:MI0009992:in:mirtron and mmu-mir-3097:MI0014090:in:5p-tailed.
Links
Where it is published
- DOI doi.org/10.17632/msm34n43j4.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · RNA sequencing · Social Science
- Inferred from text
- Biochemistry and cell biology 72%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/msm34n43j4.1 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · researchdata tees ac uk | taxonomy-embedding@1.0.0 | title+keywords+description (72%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['RNA Sequencing'] |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |