Omics · study · 2026
Upf3a-dependent genetic compensation sustains BMP robustness during murine odontogenesis
Listed in NCBI GEO
Homology-dependent genetic compensation response (HDGCR), also known as transcriptional adaptation (TA), represent evolutionarily conserved mechanisms that buffer deleterious mutations through transcriptional upregulation of functionally related genes.
Description
However, direct in vivo evidence for HDGCR in mammal species remains limited. Bone morphogenetic protein (BMP) signaling is indispensable for murine tooth development, yet extensive ligand redundancy frequently masks phenotypes in single-gene knockouts, making odontogenesis an ideal organ system to interrogate HDGCR.
Here, we generated a conditional Upf3a knockout mouse (Upf3af/f), exhibiting normal survival and tooth development when crossed with Wnt1-Cre mice, for in vivo HDGCR studies. Loss of Upf3a abolished the compensatory upregulation of paralogous Bmp4 following Bmp2 deletion, functionally mimicking a Bmp2/Bmp4 double-deficient state. This disruption promoted proliferation of dental pulp cells and root progenitor cells and inhibited differentiation of odontoblasts, leading to severe defects in dentinogenesis and root development.
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ChIP-seq revealed that this organ-specific, Upf3a-dependent HDGCR operates independently of H3K4me3 enrichment at the Bmp4 promoter. Collectively, these findings provide in vivo mammalian evidence that Upf3a-dependent HDGCR critically modulates BMP signaling robustness during murine odontogenesis within a defined developmental and tissue context.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327865 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327865 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1452913 ncbi.nlm.nih.gov/bioproject/PRJNA1452913 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Evolutionary biology 71%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327865 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |