Data · collection · 2014
Polar soil bacterial and fungal biodiversity survey
Listed in NASA Earthdata CMR
It contains the raw sequences (.fasta files) quality scores (.qual files), flowgram data from the 454 instrument (.flow files), an index of each sequence read and the sample to which it belongs (.groups file) which can be read into the software package 'mothur' (www.mothur.org).
Description
This is provided for both the bacterial fraction (16S) and the fungal fraction (ITS). These files were generated using the Roche 454 Titanium platform on 223 soils from the 8 locations previously mentioned.
The data are generated using the 16S primers 27F and 519R and the fungal data are from the primers ITS1F and ITS 4. In the referenced study the data were analysed in mother version 1.23.1. In addition, the chemical and geographical data is provided as an excel spreadsheet.
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These parameters were all recorded but not necessarily implemented in the structural equation modelling. They are also the raw data and were transformed to reduce skewness and kurtosis. Full method details are in the manuscript.
Links
Get the data
- Download the data data.aad.gov.au/eds/3713/download ↗
download · from NASA CMR
Where it is published
- DOI doi.org/10.4225/15/526f42ada05b1 ↗
DOI / persistent id · from NASA CMR
Documentation and papers
- data.aad.gov.au /aadc/metadata/citation.cfm?entry_id=soil_bacteria_fungi ↗
Citation reference for this metadata record and dataset
documentation · from NASA CMR
Catalogue records · 2
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C1214313809-AU_AADC.umm_json ↗
metadata API · from NASA CMR
- CMR record cmr.earthdata.nasa.gov/search/concepts/C1214313809-AU_AADC.html ↗
catalogue entry · from NASA CMR
Topics
- Stated by source
- Automated DNA Sequencer · Bacteria/Archaea · FIELD INVESTIGATION · FIELD SURVEYS · Fungi · LABORATORY · Microfauna · Microflora · Not provided · Soil Chemistry
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C1214313809-AU_AADC | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[instrument].gcmd_instrument:ads | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/bacteria-archaea | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/fungi | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/land-surface/soils/microfauna | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/land-surface/soils/microflora | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/land-surface/soils/soil-chemistry | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:field-investigation | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:field-surveys | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:laboratory | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |