Data · dataset · 2022
PubTator Central
Listed in Hugging Face Datasets
Description
PubTator Central (PTC, ncbi.nlm.nih.gov/research/pubtator/) is a web service for exploring and retrieving bioconcept annotations in full text biomedical articles. PTC provides automated annotations from state-of-the-art text mining systems for genes/proteins, genetic variants, diseases, chemicals, species and cell lines, all available for immediate download. PTC annotates PubMed (30 million abstracts), the PMC Open Access Subset and the Author Manuscript Collection (3 million full text articles).
Updated entity identification methods and a disambiguation module based on cutting-edge deep learning techniques provide increased accuracy.
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/bigbio/pubtator_central ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/bigbio/pubtator_central ↗
metadata API · from Hugging Face
Topics
- From keywords
- Computer Science & AI
- Inferred from text
- Text 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | bigbio/pubtator_central | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:text | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license_text | source · Hugging Face | connector:huggingface@1.0.0 | |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |