Data · dataset · 2026
Data acquisition
Listed in ScienceDB
Description
Relevant data were retrieved from public databases. The transcriptome dataset of BRCA (TCGA-BRCA; access date: February 27, 2025) was obtained from the UCSC database (xena.ucsc.edu/) as the training set, comprising 1,113 BRCA and 113 control tissue samples. The GSE42568 dataset from the GPL570 platform (access date: February 27, 2025) was retrieved from the Gene Expression Omnibus (GEO) database (ncbi.nlm.nih.gov/geo/) as a validation set, including 104 BRCA and 17 control samples.
The GSE243526 dataset (GPL18573), containing 12 BRCA and 4 control samples, was also obtained from the GEO database as a scRNA-seq dataset.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.35995 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Single-cell RNA sequencing 65%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.35995 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |