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Data · dataset · 2026

Supplementary Data to: "Activation mechanism of the full-length histidine kinase LvrB from pathogenic Leptospira"

Listed in DaRUS

MD data (author K. Pluhackova): Initial coordinate and simulation input files and a coordinate files of the final outputs as well as of the simulation trajectories (protein only) for all-atom MD simulations of LvrB performed using CHARMM36m/TIP4p in GROMACS2023.

Description

(pdb, xtc) Simulation data on phosphorylated aspartic acid (residue APP) with parameters generated by CHARMM-GUI are included. Analysis scritps of experimental data (authors S. Hiller and E. Augustoni): The jupyter notebook titled "integrate_dotplot.ipynb" is used to quantify dot intensities from an autophosphorylation assay.

The directory YD_distance_pdb contains pdb files and scripts used to statistically analyze domain structures of two-component systems. Details can be found in the Methods of our paper.

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Biochemistry and cell biology 71% · Simulation 75%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
DaRUSdoi:10.18419/DARUS-566411 d agoJSON v1
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concepts[field].local:field:medicine-healthmapping · darus uni stuttgart deconnector:darus_uni_stuttgart_de@1.0.0/subjects
concepts[method].local:method:simulationenrichment · darus uni stuttgart dekeyword-concept-rules@1.0.0title+description (75%)
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