← Search

Omics · study · 2026

The role of alternative polyadenylation in a mouse model of alcohol dependence

Listed in NCBI GEO

Alternative polyadenylation (APA) generates mRNAs with varying lengths of 3’ untranslated regions or transcripts that encode distinct protein carboxy-terminal ends.

Description

While APA is a frequent mechanism for regulating gene expression, it is especially consequential in neurons, where localized protein synthesis supports the activities of dendrites and axons. This localized protein synthesis is crucial for axon guidance and synaptic plasticity, forming the basis for learning and memory, key processes associated with the development of alcohol use disorder (AUD).

We investigated the role of APA in AUD using a mouse model of alcohol dependence, examining three brain regions in both sexes during protracted withdrawal, characterized by increased voluntary drinking after chronic intermittent ethanol (CIE) exposure. While we discovered APA changes in both sexes, our analysis revealed hundreds of genes undergoing APA in male but not female mice, indicating that these genes may contribute more to the CIE-induced escalation of ethanol consumption and dependence in males.

Read the rest (2 more)

Notably, male and female mice displayed distinct APA signatures, with many affected genes shared across brain regions in males but not females. APA genes minimally overlapped with differentially expressed genes (DEGs). Using snRNA-Seq datasets, we determined that the APA genes were associated almost exclusively with neurons, while DEGs were associated with microglia, astrocytes, and endothelial cells.

Functional enrichment analysis showed that pathways related to APA genes were involved in synaptic integrity, plasticity, and maintenance. Our study suggests that APA is a crucial sex-dependent mechanism in AUD with the potential to influence localized neuronal protein expression during protracted withdrawal and to modify alcohol-seeking behavior.

Links

Topics

From keywords
Life Sciences
Inferred from text
Single-cell RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE31038915 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:single-cell-rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title