Omics · study · 2026
The role of alternative polyadenylation in a mouse model of alcohol dependence
Listed in NCBI GEO
Alternative polyadenylation (APA) generates mRNAs with varying lengths of 3’ untranslated regions or transcripts that encode distinct protein carboxy-terminal ends.
Description
While APA is a frequent mechanism for regulating gene expression, it is especially consequential in neurons, where localized protein synthesis supports the activities of dendrites and axons. This localized protein synthesis is crucial for axon guidance and synaptic plasticity, forming the basis for learning and memory, key processes associated with the development of alcohol use disorder (AUD).
We investigated the role of APA in AUD using a mouse model of alcohol dependence, examining three brain regions in both sexes during protracted withdrawal, characterized by increased voluntary drinking after chronic intermittent ethanol (CIE) exposure. While we discovered APA changes in both sexes, our analysis revealed hundreds of genes undergoing APA in male but not female mice, indicating that these genes may contribute more to the CIE-induced escalation of ethanol consumption and dependence in males.
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Notably, male and female mice displayed distinct APA signatures, with many affected genes shared across brain regions in males but not females. APA genes minimally overlapped with differentially expressed genes (DEGs). Using snRNA-Seq datasets, we determined that the APA genes were associated almost exclusively with neurons, while DEGs were associated with microglia, astrocytes, and endothelial cells.
Functional enrichment analysis showed that pathways related to APA genes were involved in synaptic integrity, plasticity, and maintenance. Our study suggests that APA is a crucial sex-dependent mechanism in AUD with the potential to influence localized neuronal protein expression during protracted withdrawal and to modify alcohol-seeking behavior.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE310nnn/GSE310389 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310389 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1365872 ncbi.nlm.nih.gov/bioproject/PRJNA1365872 ↗
project · from NCBI GEO
- PubMed 42595924 pubmed.ncbi.nlm.nih.gov/42595924 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE310389 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |