Omics · study · 2026
Cardiac contractions shape endocardial identity by repressing veno-lymphatic fate.
Listed in NCBI GEO
The heart responds to mechanical cues generated by its own contractions and by blood flow.
Description
Multiple cardiac features are shaped by these mechanical forces, including epicardial coverage, trabeculation, and valves. To further investigate the role of cardiac contractions during cardiac development, we developed a specific marker for endocardial cells that also labels the sinus venosus in zebrafish.
We show that cardiac contractions are necessary to maintain endocardial identity during development by restricting venous fate to the sinus venosus and the lower atrium. Furthermore, we found that the ventricular endocardium, which expresses arterial markers, is also defined by mechanical forces. We identify Notch signaling as a key regulator of venous fate in the endocardium, via the repression of the transcription factors mafb and nr2f1a.
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In a therapeutic context, we show that cardiac contractions, not blood flow, are required to repress venous fate in the endocardium. We observe that myocardial infarction patients display a similar effect in regions with impaired contractility. Altogether, these results indicate that cardiac contractions regulate endocardial heterogeneity by repressing venous fate in developmental and pathological contexts, thereby advancing our understanding of the consequences of heart failure.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE313nnn/GSE313450 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE313450 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1379545 ncbi.nlm.nih.gov/bioproject/PRJNA1379545 ↗
project · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Heart 75% · Myocardial infarction 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE313450 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:myocardial-infarction | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |