Omics · study · 2026
BACH1 orchestrates macrophage state transitions to coordinate regenerative inflammation [Individualmouse]
Listed in NCBI GEO
To delineate the transcriptional changes, we used the cardiotoxin (CTX) acute muscle injury model and profiled the chromatin accessibility (ATAC-seq) and gene expression (RNA-seq) in sorted macrophage populations at different time-points during muscle regeneration.
Description
We identified BACH1 a heme-responsive transcriptional repressor, as a novel regulator of this process. Histological analysis reveals that Bach1 myeloid-specific knockout mice present a persistent necrotic fiber as well as delayed tissue repair while FACS and bulk RNA-seq show an abnormal macrophage phenotype switch and deregulation of critical genes involved in regenerative inflammation.
To study how BACH1 affects the macrophage subtype specification and cellular composition during muscle repair, we have performed single-cell RNA-seq (scRNA-seq) experiments in control and myeloid specific Bach1 knockout models at different time points post CTX injury in mice. Our results indicate significant differences in the macrophage subsets composition and gene expression profiles demonstrated by the magnitude of expression of critical inflammatory and repair-related genes.
Read the rest (1 more)
In conclusion, by combining single-cell transcriptomics and macrophage-specific knockouts, we revealed a crucial role for BACH1 in regulating macrophage subtype specification and subsequently skeletal muscle regeneration.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE294nnn/GSE294248 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294248 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1248878 ncbi.nlm.nih.gov/bioproject/PRJNA1248878 ↗
project · from NCBI GEO
- PubMed 42269013 pubmed.ncbi.nlm.nih.gov/42269013 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 70% · RNA sequencing 65% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE294248 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |