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Omics · study · 2026

BACH1 orchestrates macrophage state transitions to coordinate regenerative inflammation [Individualmouse]

Listed in NCBI GEO

To delineate the transcriptional changes, we used the cardiotoxin (CTX) acute muscle injury model and profiled the chromatin accessibility (ATAC-seq) and gene expression (RNA-seq) in sorted macrophage populations at different time-points during muscle regeneration.

Description

We identified BACH1 a heme-responsive transcriptional repressor, as a novel regulator of this process. Histological analysis reveals that Bach1 myeloid-specific knockout mice present a persistent necrotic fiber as well as delayed tissue repair while FACS and bulk RNA-seq show an abnormal macrophage phenotype switch and deregulation of critical genes involved in regenerative inflammation.

To study how BACH1 affects the macrophage subtype specification and cellular composition during muscle repair, we have performed single-cell RNA-seq (scRNA-seq) experiments in control and myeloid specific Bach1 knockout models at different time points post CTX injury in mice. Our results indicate significant differences in the macrophage subsets composition and gene expression profiles demonstrated by the magnitude of expression of critical inflammatory and repair-related genes.

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In conclusion, by combining single-cell transcriptomics and macrophage-specific knockouts, we revealed a crucial role for BACH1 in regulating macrophage subtype specification and subsequently skeletal muscle regeneration.

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From keywords
Life Sciences
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE29424812 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3101enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[modality].local:modality:single-cell-rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title