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Omics · study · 2026

Roots in Action for the Fe Response: Early Response-Omics in Tomato Dependent on the N-Form Applied

Listed in NCBI GEO

In soils, the bioavailability of nitrogen (N) and iron (Fe) is often not adequate to sustain plant demand, with these nutrients being two of the main constraints for crop production.

Description

Among macro- and micro-nutrients, N and Fe are the two nutrients mainly applied as fertilizers. There is a gap of knowledge about the interplay between N forms (nitrate, ammonium and urea) and the Fe response activated in plants under shortage condition of the nutrients.

Depending on the N form available to roots, plants activate different transcriptional and metabolic pathways and adjust the release of root exudates. The release of protons and other exudates by roots can promote the bioavailability of Fe in the rhizosphere. In the present work the reciprocal relationship between availability of Fe and different N forms (nitrate, ammonium, or urea) has been investigated for the molecular mechanisms activated by plants to promote their acquisition by omic data integration (“exudomic” x transcriptomic analyses).

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Transcriptomic profiles of tomato roots exposed for 4 hours to urea or ammonium clustered together, as well as their relative metabolomic profiles of root exudates after 24 hours of treatment. Interesting modulation of transcription factors (bHLH, MYB, ZAT12), of transporters (UmamiTs) and a proteolytic regulator of a phenylpropanoid enzyme (KFB-PAL) seems to play a key role to define the tomato exudome and corroborate the occurrence of a strong interplay between Fe N nutritional pathways.

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Life Sciences
Provenance · 1 source records, 7 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE29474014 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3002enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title