Omics · study · 2026
Roots in Action for the Fe Response: Early Response-Omics in Tomato Dependent on the N-Form Applied
Listed in NCBI GEO
In soils, the bioavailability of nitrogen (N) and iron (Fe) is often not adequate to sustain plant demand, with these nutrients being two of the main constraints for crop production.
Description
Among macro- and micro-nutrients, N and Fe are the two nutrients mainly applied as fertilizers. There is a gap of knowledge about the interplay between N forms (nitrate, ammonium and urea) and the Fe response activated in plants under shortage condition of the nutrients.
Depending on the N form available to roots, plants activate different transcriptional and metabolic pathways and adjust the release of root exudates. The release of protons and other exudates by roots can promote the bioavailability of Fe in the rhizosphere. In the present work the reciprocal relationship between availability of Fe and different N forms (nitrate, ammonium, or urea) has been investigated for the molecular mechanisms activated by plants to promote their acquisition by omic data integration (“exudomic” x transcriptomic analyses).
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Transcriptomic profiles of tomato roots exposed for 4 hours to urea or ammonium clustered together, as well as their relative metabolomic profiles of root exudates after 24 hours of treatment. Interesting modulation of transcription factors (bHLH, MYB, ZAT12), of transporters (UmamiTs) and a proteolytic regulator of a phenylpropanoid enzyme (KFB-PAL) seems to play a key role to define the tomato exudome and corroborate the occurrence of a strong interplay between Fe N nutritional pathways.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE294nnn/GSE294740 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294740 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1251534 ncbi.nlm.nih.gov/bioproject/PRJNA1251534 ↗
project · from NCBI GEO
- PubMed 42484442 pubmed.ncbi.nlm.nih.gov/42484442 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Agriculture, land and farm management 70%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE294740 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3002 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |