Omics · study · 2026
Ezh2-Y641F mutations are distinct from EZH2 overexpression and impact germinal center B cells in a timing-dependent manner
Listed in NCBI GEO
Germinal center (GC) B cell-derived Non-Hodgkin Lymphomas (NHL) frequently exhibit gain-of-function alterations in the H3K27 methyltransferase EZH2, including a heterozygous, somatic hotspot mutation at position Y646 (Y641 in mice) or overexpression of wild-type protein (EZH2OE).
Description
To determine whether Ezh2Y646 mutations and EZH2OE are functionally equivalent or distinct gain-of-function events in GC B cells, we directly compared EZH2Y641F/+ and EZH2OE using conditional mouse models that activate these events either throughout the B lineage or specifically within GC B cells.
Across transplant and non-transplant settings, we found that EZH2OE yields surprisingly weak phenotypes, while EZH2Y641F/+ causes strong but timing-dependent effects in GC cells. We observed that GC-specific EZH2Y641F/+ causes GC expansion and promotes lymphoma phenotypes, whereas early B lineage activation reduced GC fitness. Furthermore, transcriptional analysis and H3K27me3 profiling revealed that EZH2OE and EZH2Y641F/+ are non-equivalent molecular events.
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EZH2OE minimally impacted gene expression and H3K27me3 profiles compared to controls, while EZH2Y641F/+ caused widespread differential gene expression and broad redistribution of H3K27me3. The extent and localization of the redistribution depend on when the mutation is activated in the B lineage, potentially explaining why early vs. GC-restricted EZH2Y641F produce disparate GC phenotypes. Ultimately, we determined that EZH2Y641F/+ and EZH2OE are functionally distinct events, with only GC-restricted EZH2Y641F/+ contributing to GC B cell transformation phenotypes.
Our evidence supports the conclusion that EZH2Y641F/+ is a neomorph of EZH2WT rather than a pure gain-of-function event and reveals the context-dependent nature of its role in B-NHL.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE343nnn/GSE343852 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343852 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1513024 ncbi.nlm.nih.gov/bioproject/PRJNA1513024 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE343852 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |