Omics · study · 2026
In silico Transcriptomics-based Drug Repositioning in a rat model identifies Vorinostat as a candidate to modulate neuroinflammation in Neurocysticercosis
Listed in NCBI GEO
Neurocysticercosis (NCC) is a major cause of epilepsy and neurological symptoms in low- and middle-income countries.
Description
Although antiparasitic treatment targets the parasite, it often fails to fully resolve symptoms and can exacerbate brain tissue damage. Using a rat model of NCC and transcriptomic profiling, we assessed the effects of infection and treatment on brain gene expression to uncover disease mechanisms and identify therapeutic candidates.
We analyzed transcriptomic profiles at two stages of infection (4- and 6-month post-infection (MPI)), and after treatment at 6 MPI (6 MPI +T). At 6 MPI, fewer immune-related genes and pathways were enriched compared to 4 MPI, likely due to MAPK pathway repression, but immune activation increased significantly after treatment, possibly due to cyst degeneration. Drug repositioning identified 30 candidate drugs.
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Among them, vorinostat emerged as the most promising, enriched across all stages and predicted to cross the blood–brain barrier, with potential to reduce neuroinflammation and neurodegeneration.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE306nnn/GSE306561 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306561 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1311118 ncbi.nlm.nih.gov/bioproject/PRJNA1311118 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE306561 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |