Omics · study · 2026
Long FAM13A isoforms regulate human lung epithelial development in vitro
Listed in NCBI GEO
We performed single cell transcriptomic profiling of induced human pluripotent stem cells (iPSCs)-derived anterior foregut progenitors (D6) and lung progenitors (D15).
Description
FAM13A-long isoforms were knocked out of iPSCs prior to differentiation. Prior to capture, cells were labelled with hashing antibodies (HTO).
Cells were captured for 10x Genomics Single cell capture (V3 protocol), and GEX and HTO libraries were sequenced. HTODemux function was used to demultiplex the samples. FAM13A-long KO changed clustering of D15 NKX2-1+ lung progenitors
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE306nnn/GSE306210 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306210 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1309688 ncbi.nlm.nih.gov/bioproject/PRJNA1309688 ↗
project · from NCBI GEO
- PubMed 42083809 pubmed.ncbi.nlm.nih.gov/42083809 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE306210 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |