Data · dataset · 2016
MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population
Listed in LSHTM Data Compass
Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data.
Description
The analysis was performed by conducting all possible pair-wise comparisons between all the SNPs across 14 merozoite genes using a pair-wise correlation analysis and a Bonferroni correction for multiple comparisons. The red boxes represent significant correlations between SNPs and thus SNPs in LD, orange represents correlations between SNPs that are not significant, white indicates the SNPs that are not correlated and therefore they are not in LD and grey represents cases where the SNP data is missing in one or both of the paired SNPs.
Links
Where it is published
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/212/1/File1-PCRconditions_and_PrimerSequences.xlsx ↗
landing page · from lshtm ac uk
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/212/3/File3-genotypeParasitePairs.docx ↗
landing page · from lshtm ac uk
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/212/4/File4-LD_analysis.xlsx ↗
landing page · from lshtm ac uk
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/212/5/File5-SNPs_RepeatRegionFrequencies.xlsx ↗
landing page · from lshtm ac uk
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/212/6/File6_Rh5_SNPs.docx ↗
landing page · from lshtm ac uk
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/212/2/File2-Merozoite_gene.docx ↗
landing page · from lshtm ac uk
- DOI doi.org/10.6084/m9.figshare.c.3603686_d5.v1 ↗
DOI / persistent id · from lshtm ac uk
Catalogue records · 1
- OAI-PMH record datacompass.lshtm.ac.uk/cgi/oai2?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3… ↗
metadata API · from lshtm ac uk
Topics
- From keywords
- Earth & Environmental Science · Humanities · Life Sciences · Medicine & Health · Social Science
- Inferred from text
- Immunology 70%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| LSHTM Data Compass | oai:datacompass.lshtm.ac.uk:212 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].anzsrc:group:3204 | enrichment · lshtm ac uk | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| description | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| title | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | /metadata/dc/title |