Data · dataset · 2018
Processed data, code, and Jupiter notebooks from "Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria"
Listed in CaltechDATA
This contains all processed data sets used to construct expression shift plots and energy matrices, as well as several Jupiter notebooks associated with supplemental information of the work.
Description
Scripts used for data processing (in particular for .fastq files) are also included.
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/8ezyf-fm223 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.960 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/8ezyf-fm223 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- DNA affinity chromatography · gene regulation · massively parallel reporter assays · mass spectrometry · quantitative models
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Mass spectrometry · Social Science
- Inferred from text
- Genetics 70%
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | 8ezyf-fm223 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · data caltech edu | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[modality].local:modality:mass-spectrometry | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['mass spectrometry'] |
| concepts[topic].invenio_subject:data_caltech_edu:dna-affinity-chromatography | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:gene-regulation | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:massively-parallel-reporter-assays | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:mass-spectrometry | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:quantitative-models | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |