Excel · study · 2026
Spatial transcriptomic profiling of alveoli and granuloma regions in patients with active pulmonary tuberculosis
Listed in NCBI GEO
Spatial transcriptomic profiling was performed using the GeoMx DSP Whole Transcriptome Atlas to measure expression of over 18,000 genes in alveoli and granuloma core and mantle regions from patients with active pulmonary tuberculosis.
Description
Differential gene expression revealed region-specific transcriptional profiles, including signatures related to antimicrobial response and lipid metabolism.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE301nnn/GSE301876 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301876 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1287685 ncbi.nlm.nih.gov/bioproject/PRJNA1287685 ↗
project · from NCBI GEO
- PubMed 40791339 pubmed.ncbi.nlm.nih.gov/40791339 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Bioinformatics and computational biology 69%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE301876 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |