Omics · dataset · 2026
arcinstitute/Stack-CellxGene45M
Listed in Hugging Face Datasets
CellxGene 45M Collection A curated subset of CellxGene (~45M cells) used to align the Stack model after pretraining on full human scBaseCount.
Description
Selection Criteria ≥ 50,000 cells per dataset ≥ 5 donors per dataset Cell Type Annotations Author-annotated coarse-grained cell type labels were heuristically identified and transferred to adata.obs["author_cell_type"].
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/arcinstitute/Stack-CellxGene45M ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/arcinstitute/Stack-CellxGene45M ↗
metadata API · from Hugging Face
Topics
- From keywords
- Computer Science & AI · Genomics · Single-cell RNA sequencing
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | arcinstitute/Stack-CellxGene45M | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · Hugging Face | vocabulary-mapper@1.0.0 | keywords['scRNA-seq'] |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license | source · Hugging Face | connector:huggingface@1.0.0 | /tags[license:*] |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |