Data · collection
Benthic cover from automated annotation of benthic images collected at coral reef sites in the Pacific Remote Island Areas and American Samoa from 2018-06-08 to 2018-08-11 (NCEI Accession 0204646)
Listed in NASA Earthdata CMR
Description
The coral reef benthic community data described here result from the automated annotation (classification) of benthic images collected during photoquadrat surveys conducted by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD, formerly the Coral Reef Ecosystem Division) as part of NOAA's ongoing National Coral Reef Monitoring Program (NCRMP). SCUBA divers conducted benthic photoquadrat surveys in coral reef habitats according to protocols established by ESD and NCRMP during the ESD-led NCRMP mission to the islands and atolls of the Pacific Remote Island Areas (PRIA) and American Samoa from June 8 to August 11, 2018.
Still photographs were collected with a high-resolution digital camera mounted on a pole to document the benthic community composition at predetermined points along transects at stratified random sites surveyed only once as part of Rapid Ecological Assessment (REA) surveys for corals and fish (Ayotte et al. 2015; Swanson et al. 2018) and permanent sites established by ESD and resurveyed every ~3 years for climate change monitoring.
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Overall, 30 photoquadrat images were collected at each survey site. The benthic habitat images were quantitatively analyzed using the web-based, machine-learning, image annotation tool, CoralNet (coralnet.ucsd.edu; Beijbom et al. 2015; Williams et al. 2019). Ten points were randomly overlaid on each image and the machine-learning algorithm "robot" identified the organism or type of substrate beneath, with 300 annotations (points) generated per site.
Benthic elements falling under each point were identified to functional group (Tier 1: hard coral, soft coral, sessile invertebrate, macroalgae, crustose coralline algae, and turf algae) for coral, algae, invertebrates, and other taxa following Lozada-Misa et al. (2017). These benthic data can ultimately be used to produce estimates of community composition, relative abundance (percentage of benthic cover), and frequency of occurrence.
Links
Get the data
- ftp-oceans.ncei.noaa.gov /nodc/archive/arc0148/0204646 ↗
These data are available through the File Transfer Protocol (FTP). You may use any FTP client to download these data.
download · from NASA CMR
- ncei.noaa.gov /archive/accession/download/204646 ↗
Navigate directly to the URL for data access and direct download.
download · from NASA CMR
- ncei.noaa.gov /archive/accession/oas/204646 ↗
Navigate directly to the URL for a descriptive web page with download links.
download · from NASA CMR
- ncei.noaa.gov /archive/accession/0204646 ↗
Navigate directly to the URL for a descriptive web page with download links.
download · from NASA CMR
Documentation and papers
- Institution web page frontiersin.org/journals/marine-science ↗
documentation · from NASA CMR
- Journal article doi.org/10.3389/fmars.2019.00222 ↗
documentation · from NASA CMR
- PIFSC Administrative Report doi.org/10.7289/v5/ar-pifsc-h-17-02 ↗
documentation · from NASA CMR
- doi.org /10.1371/journal.pone.0130312 ↗
O. Beijbom, P. J. Edmunds, C. Roelfsema, J. Smith, D. I. Kline, B. Neal, M. J. Dunlap, V. Moriarty, T-Y. Fan, C-J. Tan, S. Chan, T. Treibitz, A. Gamst, B. G. Mitchell, D. Kriegman. "Towards automated
documentation · from NASA CMR
- doi.org /10.25923/39jh-8993 ↗
This SOP describes the method to collect benthic images during a rapid ecological assessment survey.
documentation · from NASA CMR
- accession.nodc.noaa.gov /0157633/data/0-data/Pacific/Biological/PIFSC_Admin_Rep_15-07.p… ↗
Coral Reef Ecosystem Program Standard Operating Procedures: Data Collection for Rapid Ecological Assessment Fish Surveys
documentation · from NASA CMR
- InPort Metadata Record fisheries.noaa.gov/inport/item/57610 ↗
documentation · from NASA CMR
- Preview graphic ncei.noaa.gov/access/metadata/landing-page/bin/gfx?id=gov.noaa.nodc%3A0204646 ↗
preview image · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C2089379357-NOAA_NCEI.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C2089379357-NOAA_NCEI.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Benthic · NOAA Ship Hi'ialakai · Not provided · photograph
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C2089379357-NOAA_NCEI | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[field].anzsrc:group:3705 | enrichment · NASA CMR | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[instrument].gcmd_instrument:photograph | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biosphere/ecosystems/marine-ecosystems/benthic | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:noaa-ship-hi-ialakai | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |