Data · dataset · 2022
GNormPlus
Listed in Hugging Face Datasets
We re-annotated two existing gene corpora.
Description
The BioCreative II GN corpus is a widely used data set for benchmarking GN tools and includes document-level annotations for a total of 543 articles (281 in its training set; and 262 in test). The
Citation
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GIA Test Collection was recently created for gene indexing at the NLM and includes 151 PubMed abstracts with both mention-level and document-level annotations. They are selected because both have a focus on human genes. For both corpora, we added annotations of gene families and protein domains.
For the BioCreative GN corpus, we also added mention-level gene annotations. As a result, in our new corpus, there are a total of 694 PubMed articles. PubTator was used as our annotation tool along with BioC formats.
Links
Where it is published
- Hugging Face dataset page huggingface.co/datasets/bigbio/gnormplus ↗
landing page · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/bigbio/gnormplus ↗
metadata API · from Hugging Face
Topics
- From keywords
- Computer Science & AI
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | bigbio/gnormplus | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license_text | source · Hugging Face | connector:huggingface@1.0.0 | |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |