Constarium
← Search

Data · dataset · 2015

simulated rice data for avi

Listed in Zenodo

4 million paired-end reads were simulated from the Oryza sativa ssp. japonica genome using the ENSEMBL v25 annotation.

Description

The reads were assembled using soapdenovo-trans with default settings. The assembly was assessed with transrate.

The file contains the reads, the set of reference transcripts that reads were simulated from, the assembled contigs, and the subset of assembled contigs that had transrate contig scores of >= 0.5.

Links

Where it is published

Catalogue records · 1
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
Zenodo1505114 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · Zenodoconnector:zenodo@1.0.0/metadata/access_right
byte_sizesource · Zenodoconnector:zenodo@1.0.0
created_datesource · Zenodoconnector:zenodo@1.0.0
descriptionsource · Zenodoconnector:zenodo@1.0.0/metadata/description
license_textsource · Zenodoconnector:zenodo@1.0.0
publication_datesource · Zenodoconnector:zenodo@1.0.0
titlesource · Zenodoconnector:zenodo@1.0.0/metadata/title
updated_datesource · Zenodoconnector:zenodo@1.0.0