Data · dataset · 2015
simulated rice data for avi
Listed in Zenodo
4 million paired-end reads were simulated from the Oryza sativa ssp. japonica genome using the ENSEMBL v25 annotation.
Description
The reads were assembled using soapdenovo-trans with default settings. The assembly was assessed with transrate.
The file contains the reads, the set of reference transcripts that reads were simulated from, the assembled contigs, and the subset of assembled contigs that had transrate contig scores of >= 0.5.
Links
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Where it is published
- Zenodo record zenodo.org/records/15051 ↗
landing page · from Zenodo
- DOI doi.org/10.5281/zenodo.15051 ↗
DOI / persistent id · from Zenodo
Catalogue records · 1
- Zenodo API zenodo.org/api/records/15051 ↗
metadata API · from Zenodo
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Zenodo | 15051 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Zenodo | connector:zenodo@1.0.0 | /metadata/access_right |
| byte_size | source · Zenodo | connector:zenodo@1.0.0 | |
| created_date | source · Zenodo | connector:zenodo@1.0.0 | |
| description | source · Zenodo | connector:zenodo@1.0.0 | /metadata/description |
| license_text | source · Zenodo | connector:zenodo@1.0.0 | |
| publication_date | source · Zenodo | connector:zenodo@1.0.0 | |
| title | source · Zenodo | connector:zenodo@1.0.0 | /metadata/title |
| updated_date | source · Zenodo | connector:zenodo@1.0.0 |