Data · dataset · 2024
Dog RNA-sequence data (from the cortex brain region) in tdf format for IGV visualization
Listed in ScienceDB
The uploaded data include four files in tdf file format (further compressed with gzip) for visualization purposes with the Integrative Genomics Viewer (IGV) programme.The data originates from four dogs (Canis familiaris), sequenced by Tandon et al. (2024).
Description
RNA was sequenced from the brain's cortical region, aligned to the CanFam 3.1 reference genome and tdf files were created from the bam files with IGVtools. Read counts were normalized to 1 million sequenced reads.Sample information (semicolon-separated):SRA_ID;Brain_bank_ID;Phenotype_classificationSRX19523790;KK3416;socialSRX19523791;KK3421;freezingSRX19523799;KK3637;intermediateSRX19523800;KK3635;freezingTandon et al. 2024.
Canine hyper-sociability structural variants associated with altered three-dimensional chromatin state. DOI: 10.1186/s12864-024-10614-6.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.12821 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.12821 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |