← Search

Data · dataset · 2025

ecthomson/Contamination-Phylogeny

Listed in LSHTM Data Compass

This script is designed to automate the process of analyzing viral genomic data, focusing on identifying cross-contamination events and constructing phylogenetic trees.

Description

It integrates sorting, filtering, and phylogenetic analysis tools.

Links

Where it is published

Catalogue records · 1

Topics

From keywords
Earth & Environmental Science · Humanities · Life Sciences · Medicine & Health · Social Science
Inferred from text
Evolutionary biology 70% · Genome sequencing 65%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
LSHTM Data Compassoai:datacompass.lshtm.ac.uk:456512 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[field].anzsrc:group:3104enrichment · lshtm ac uktaxonomy-embedding@1.0.0title+keywords+description (70%)
concepts[field].local:field:earth-environmentalmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
concepts[modality].local:modality:genome-sequencingenrichment · lshtm ac ukkeyword-concept-rules@1.0.0title+description (65%)
descriptionsource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0/metadata/dc/description
publication_datesource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0
titlesource · lshtm ac ukconnector:lshtm_ac_uk@1.0.0/metadata/dc/title