Omics · study · 2026
Insights into the gene regulation of Listeria monocytogenes incubated on corn salad
Listed in NCBI GEO
Listeria monocytogenes is an important food-borne pathogen which is frequently linked to ready-to-eat vegetables.
Description
In this work it was investigated by RNA-seq how the colonization of corn salad leaves and the commonly used packaging material polystyrene impacts on the transcriptome of L. monocytogenes NCTC 10887 at 4 °C and 22 °C. The strongest transcriptional differences occurred on corn salad at 4 °C versus polystyrene at 4 °C, yielding 2,629 differentially expressed genes (91.6% of protein-coding genes), indicating a habitat driven shift under cold-chain conditions.
Corn salad promoted regulation of virulence related genes. The prfA gene was upregulated on corn salad compared to polystyrene at both temperatures (log2FC 2.43 at 22 °C and 4.16 at 4 °C), accompanied by increased hly (2.70), inlA (4.46), and inlB (2.10) expression at 4 °C. Stress/proteostasis gene expression was elevated on corn salad, including higher transcripts of clpP (3.34–3.51), clpE (5.58–6.89), and clpB (2.08–3.74), consistent with a stressed yet persistence-prone state on leaf surfaces.
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This indicates that L. monocytogenes persisting on leafy greens can remain transcriptionally primed for host interaction at 4 °C, implying that refrigeration alone may not mitigate risk on ready-to-eat produce, underlining the importance of pre-harvest hygiene.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324553 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324553 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1435775 ncbi.nlm.nih.gov/bioproject/PRJNA1435775 ↗
project · from NCBI GEO
- PubMed 42238763 pubmed.ncbi.nlm.nih.gov/42238763 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Agricultural biotechnology 69% · RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324553 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3001 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |