Canine atopic dermatitis datasets

ATOPYK2 plink files contains genotype data from five dog breeds with and without atopic dermatitis. The ATOPYK2 datafiles were used for imputation.

These are pre-QC:ed with the following plink settings --maf 0.001 --geno 0.05 --mind 0.05 #We recommend a second qc before doing the imputation. The imputation was then run per chromosome so for redoing the imputation, as was done in the publication to which this data is connected, use the following plink code: plink --bfile ATOPYK2 --chr $chrN --make-bed --dog --allow-no-sex --keep-allele-order --maf 0.001 --geno 0.2 --out 'ATOPYK.chr'$chrN #The final datasets after imputation are datasets split breed wise and in plink format.