Omics · study · 2026
In planta transcriptome analysis of Pseudomonas syringae pv. tomato DC3000 two component regulator mutant cvsR during early infection and early exposure to pattern-triggered immunity in Arabidopsis thaliana
Listed in NCBI GEO
We extracted P. syringae transcriptome from infected A. thaliana tissue under naive or PTI preactivated tissue by flg22 treatment, through physical separation by low speed centrifugation at 5 hours post inoculation.
Description
We compared the transcriptome of wildtype strain and mutant strain of cvsR, a previous identified two component regulator. This study aim to understand bacterial response to PTI and the role of cvsR regulon in plant.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327564 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327564 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1451227 ncbi.nlm.nih.gov/bioproject/PRJNA1451227 ↗
project · from NCBI GEO
- PubMed 42390087 pubmed.ncbi.nlm.nih.gov/42390087 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Agricultural biotechnology 71%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327564 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3001 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |